Does anyone know if the code for generating all of the underlying bits for #recount3 (genome indices, exons, genes, etc) for a different genome organism (i.e. zebrafish) is available publicly?

I know of the monorail-external repo that helps someone running their own human or mouse samples in the same workflow, but I've got data from zebrafish that I'd love to run similarly.

#Bioinformatics #Bioconductor #RStats

Maybe @benlangmead (or another) knows of something I missed?

Does anyone know if the code for generating all of the underlying bits for #recount3 (genome indices, exons, genes, etc) for a different genome organism (i.e. zebrafish) is available publicly?

I know of the monorail-external repo that helps someone running their own human or mouse samples in the same workflow, but I've got data from zebrafish that I'd love to run similarly.

#Bioinformatics #Bioconductor #RStats

Maybe @benlangmead (or another) knows of something I missed?

Hello, here's my fediverse re- #introduction since I moved to #fediscience

I'm a computational biologist/bioinformatician, professor at UCLouvain in Brussels. I work with various types of omics data, with a special interest in #MassSpectrometry and #proteomics. I (co-)develop and maintain several #rstats and #Bioconductor packages. In addition to R, I use #emacs and #orgmode quite a bit.

Thanks for reading!

Hello, here's my fediverse re- #introduction since I moved to #fediscience

I'm a computational biologist/bioinformatician, professor at UCLouvain in Brussels. I work with various types of omics data, with a special interest in #MassSpectrometry and #proteomics. I (co-)develop and maintain several #rstats and #Bioconductor packages. In addition to R, I use #emacs and #orgmode quite a bit.

Thanks for reading!