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Fabrizio Musacchio
Fabrizio Musacchio
@FabMusacchio@mastodon.social  ·  activity timestamp last week

There‘s now a #PyTorch version of #Cascade 👌, the #spike inference pipeline for #Calcium #imaging, as @ptrrupprecht just explained on his blog:

🌍 https://gcamp6f.com/2026/02/17/cascadetorch-a-pytorch-version-of-cascade-for-spike-inference/
🧑‍💻 https://github.com/PTRRupprecht/CascadeTorch
📄 https://www.nature.com/articles/s41593-021-00895-5

#CascadeTorch #DeepLearning #CompNeuro #Neuroscience #2pImaging #2p #opensource

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Cascade is a deep learning-based method for inferring neuronal spike rates from calcium imaging signals (ΔF/F traces). It uses convolutional neural networks trained on a large ground-truth database of simultaneous electrophysiology and calcium recordings. The original publication in 2021 was trained on a broad range of datasets; more recent versions were trained on mouse spinal cord data and, most recently, on variants of the new sensor GCaMP8. GIF source: https://gcamp6f.com/2026/02/17/cascadetorch-a-pytorch-version-of-cascade-for-spike-inference/
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GitHub - PTRRupprecht/CascadeTorch: Calibrated inference of spiking from calcium ΔF/F data using deep networks in PyTorch

Calibrated inference of spiking from calcium ΔF/F data using deep networks in PyTorch - PTRRupprecht/CascadeTorch
A blog about neurophysiology

CascadeTorch: a PyTorch version of Cascade for spike inference

I’m glad to share a PyTorch-based implementation of spike inference from calcium imaging data: CascadeTorch, now available on GitHub. The original Cascade repository remains fully supported. …
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Fabrizio Musacchio
Fabrizio Musacchio
@FabMusacchio@mastodon.social  ·  activity timestamp last week

Spike-timing-dependent #plasticity (#STDP) is a core rule in #ComputationalNeuroscience that adjusts #synaptic strength based on precise pre- vs. postsynaptic #spike timing, enabling #TemporalCoding and #learning in #SNN. In this post, I summarize its mathematical formulation, functional consequences for learning and #memory along with a simple #Python example:

🌍 https://www.fabriziomusacchio.com/blog/2026-02-12-stdp/

#CompNeuro #Neuroscience #SNN #NeuralDynamics #NeuralPlasticity

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STDP learning window W(Δt) as a function of the relative spike timing Δt
STDP learning window W(Δt) as a function of the relative spike timing Δt
STDP learning window W(Δt) as a function of the relative spike timing Δt
Synaptic weight dynamics with and without spike-timing-dependent plasticity. Left: STDP-enabled network. Synaptic weights differentiate over time and converge toward a bimodal distribution. Right: Control simulation without STDP. Synaptic weights remain at their initial random values and show no dynamical reorganization. Top panels show the final synaptic weights, middle panels show the distribution of synaptic weights, and bottom panels show the time course of two example synapses.
Synaptic weight dynamics with and without spike-timing-dependent plasticity. Left: STDP-enabled network. Synaptic weights differentiate over time and converge toward a bimodal distribution. Right: Control simulation without STDP. Synaptic weights remain at their initial random values and show no dynamical reorganization. Top panels show the final synaptic weights, middle panels show the distribution of synaptic weights, and bottom panels show the time course of two example synapses.
Synaptic weight dynamics with and without spike-timing-dependent plasticity. Left: STDP-enabled network. Synaptic weights differentiate over time and converge toward a bimodal distribution. Right: Control simulation without STDP. Synaptic weights remain at their initial random values and show no dynamical reorganization. Top panels show the final synaptic weights, middle panels show the distribution of synaptic weights, and bottom panels show the time course of two example synapses.
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