#Tag · bonfire.cafe

new blog post: "Where do the WikiPathways come from?" https://chem-bla-ics.linkedchemistry.info/2026/02/22/where-do-the-wikipathways-come-from.html https://doi.org/10.59350/6smn2-ah530

"We can see who the 8 people are who contributed to this pathway [..], and many authors are member of the @wikipathways review team who focus more on technical quality and the biology. The first author, however, often is the person who contributed most of the biological knowledge in the pathway, in this case Akhilesh Pandey from the NetSlim collaboration"

#wikipathways #biology #provenance

chem-bla-ics

Where do the WikiPathways come from?

WikiPathways was founded in 2008, in the year I left Wageningen (and we Nijmegen) and moved to Uppsala, Sweden. When we dediced to move back to The Netherlands in 2012, I got to opporunity to join the Department of Bioinformatics (BiGCaT) and work on Open PHACTS. I had visited the group in March 2011 because I had a COST action workshop near Maastricht (about nanoQSAR) and the bioinformatics group did WikiPathways.

Egon Willighagen

@egonw@social.edu.nl · 5 days ago

new blog post: "Where do the WikiPathways come from?" https://chem-bla-ics.linkedchemistry.info/2026/02/22/where-do-the-wikipathways-come-from.html https://doi.org/10.59350/6smn2-ah530

#wikipathways #biology #provenance

chem-bla-ics

Where do the WikiPathways come from?

Hacker News

@h4ckernews@mastodon.social · last month

Provenance Is the New Version Control

https://aicoding.leaflet.pub/3mcbiyal7jc2y

#HackerNews #Provenance #VersionControl #DataManagement #SoftwareDevelopment #TechTrends

Provenance Is the New Version Control

The Phoenix Architecture

d@nny disc@ mc² and 1 other boosted

Samuel Lampa

@shl@genomic.social · 4 months ago

📢 Just released 0.5.0 of SciCommander, a tool to automatically track provenance information about shell commands, into HTML reports with the full provenance graph for every output. This version brings much improved usability and better looks. https://github.com/samuell/scicommander #provenance #bioinformatics

Screenshot of SciCommander shell welcome screen.

Samuel Lampa

@shl@genomic.social · 4 months ago

Tim Chambers boosted

Open Art Data

@openartdata@mastodon.art · 6 months ago

#invitation #arthistory #event September 15!

"Provenance and Restitution: Shared knowledge graphs as a tool in recovering looted cultural heritage and the histories of marginalized people"

We will explore how Wikidata can help looted art researchers to identify hidden networks and restore lost information. For full description see:

https://kulturgutverluste.de/meldungen/kolloquium-provenienzforschung-shared-knowledge-graphs-tool-recovering
#wikidata #lootedart #knowledgegraphs #arthistory @Curator#Holocaust #provenance #restitution #culturalheritage #museum #berlin

Event on September 15: “Shared knowledge graphs as a tool in recovering looted cultural heritage and the histories of marginalized people“.

I hope the information provided will be helpful to cultural heritage professionals, provenance researchers, claimants, Holocaust scholars, art crime experts, museum and art market people.

(Do not let the words "knowledge graph" scare you. In this talk, I’ll show how we can connect information—people, places, artworks, events—into a kind of map of relationships. Think of it as a network of stories and connections. We can use this to retrieve lost information and to explore hidden networks over long periods of time, which is very useful for Nazi-looted art as well as other kinds of stolen or disappeared cultural heritage.)

The event will take place at the Deutsches Zentrum Kulturgutverluste, Außenstelle Berlin, Seydelstraße 18, 10117 Berlin.

It is also possible to join the event via Webex. (Register by Sep 12) — Event on September 15: “Shared knowledge graphs as a tool in recovering looted cultural heritage and the histories of marginalized people“. I hope the information provided will be helpful to cultural heritage professionals, provenance researchers, claimants, Holocaust scholars, art crime experts, museum and art market people. (Do not let the words "knowledge graph" scare you. In this talk, I’ll show how we can connect information—people, places, artworks, events—into a kind of map of relationships. Think of it as a network of stories and connections. We can use this to retrieve lost information and to explore hidden networks over long periods of time, which is very useful for Nazi-looted art as well as other kinds of stolen or disappeared cultural heritage.) The event will take place at the Deutsches Zentrum Kulturgutverluste, Außenstelle Berlin, Seydelstraße 18, 10117 Berlin. It is also possible to join the event via Webex. (Register by Sep 12)

Open Art Data

@openartdata@mastodon.art · 6 months ago

#invitation #arthistory #event September 15!

"Provenance and Restitution: Shared knowledge graphs as a tool in recovering looted cultural heritage and the histories of marginalized people"

We will explore how Wikidata can help looted art researchers to identify hidden networks and restore lost information. For full description see: