Post
I actually forgot the link in the last note: https://github.com/snakemake/snakemake-executor-plugin-slurm/pull/410
Meanwhile, it is not a draft PR any more. It is just a PR. And there is some more work to do. Think, I will merge it relatively soon into the main branch for a release.
The other features merit some more testing, though.
On a similar note: there is another (draft) PR. The #SLURM executor plugin for #Snakemake is capable of respecting partition definitions since v. 2.
I had the notion, that this is rather difficult to set this up manually and wrote a little command line helper. It queries the SLURM config and writes out a preliminary partition configuration template. This still requires manual adaptation, I'm afraid.
A small step forward as it requires both an understanding of Snakemake and your local SLURM setup. The world is as is it is, the phantasy of admin teams is unlimited and a one-fits-all solution is not on the horizon.
Still, if you want to try it out and provide feedback, this would be very much appreciated! All suggestions are welcome!
I actually forgot the link in the last note: https://github.com/snakemake/snakemake-executor-plugin-slurm/pull/410
Meanwhile, it is not a draft PR any more. It is just a PR. And there is some more work to do. Think, I will merge it relatively soon into the main branch for a release.
The other features merit some more testing, though.
Well, I did a release today:
https://fediscience.org/@snakemake/116097371050966872
And had a wonderful, productive discussion with co-developers. Looking eagerly forward to the #SnakemakeHackathon2026!
and ... a small bug fix release: somebody has forgotten a dependency declaration:
All in all, the last year has been eventful. Not so much new functionality, but accounting for LOTS of exceptions on various clusters.
It is time to move forward at the #SnakemakeHackathon2026 !
