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Christian Meesters
@rupdecat@fediscience.org  ยท  activity timestamp 2 days ago

Just getting back from two day course teaching #Snakemake programming on #HPC clusters. And I have several observations:

- the education level everywhere else seems way better, than on my home cluster. It is still a good idea, to assume the worst.
- it is never a good idea to accept bring-your-own-device: The Windows users with their tiny laptops will always have connection issues to a HPC system and will be working with one terminal (and usually tiny fonts).
- Some kind of IDE, common for all on decent screens, is a minimum. There are several options.
- clusters with QOS settings (quality of service) are confusing for some, because it is of course confusing to have a new obscure flag, when you are digesting a dozen other learning items.
- I need to fix a few things ๐Ÿ˜Š

And most of all: I really need to start conceptualizing a smaller workshop, โ€œbring your workflow, and we will port it to this systemโ€. A new PR to the #SLURM plugin might help to ease the partition selection ...

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Snakemake Release Robot
@snakemake@fediscience.org  ยท  activity timestamp 4 days ago

Beep, Beep - I am your friendly #Snakemake release announcement bot.

There is a new release of the Snakemake executor for #SLURM on #HPC systems. Its version now is 1.9.2!

Give us some time, and you will automatically find the plugin on #Bioconda and #Pypi.

If you want to discuss the release, you will find the maintainers here on Mastodon!
@rupdecat and @johanneskoester

If you discover any issues, please report them on https://github.com/snakemake/snakemake-executor-plugin-slurm/issues.

See https://github.com/snakemake/snakemake-executor-plugin-slurm/releases/tag/v1.9.2 for details. Here is the header of the changelog:

๐‘…๐‘’๐‘™๐‘’๐‘Ž๐‘ ๐‘’ ๐‘๐‘œ๐‘ก๐‘’๐‘  (๐‘๐‘œ๐‘ ๐‘ ๐‘–๐‘๐‘™๐‘ฆ ๐‘Ž๐‘๐‘๐‘Ÿ๐‘–๐‘”๐‘’๐‘‘):
๐๐ฎ๐  ๐…๐ข๐ฑ๐ž๐ฌ

* logo: https://github.com/snakemake/snakemake-executor-plugin-slurm/issues/367

GitHub

Release v1.9.2 ยท snakemake/snakemake-executor-plugin-slurm

1.9.2 (2025-10-28) Bug Fixes logo (#367) (3781f36)
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