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Pierre Lindenbaum
Pierre Lindenbaum
@yokofakun@genomic.social  ·  activity timestamp 3 days ago

Hi lazywell,

is there a standard CLI tool that can be used to extract all the descendants (rdf:subClass ? ) of a given term from a local OWL ontology file ?

I wrote a stupid java xml tool but I'd like a tool that understands the OWL spec (I don't)

#rdf #ontology #owl #bioinformatics

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Damien Goutte-Gattat
Damien Goutte-Gattat
@dgouttegattat@social.incenp.org replied  ·  activity timestamp 3 days ago

@yokofakun That’d be a job for ROBOT (especially the robot extract subcommand).

(Full disclosure: I am a contributor to that tool.)

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Egon Willigh☮gen 🟥
Egon Willigh☮gen 🟥
@egonw@mastodon.social replied  ·  activity timestamp 3 days ago

@yokofakun @dgouttegattat I am not, and have indeed been using ROBOT on the CLI. For example, to "diff" two Turtle files

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