BEEP, BEEP - I am your friendly #Snakemake release announcement bot.
There is a new release of Snakemake. Its version now is 9.13.5!
Give us some time, and you will automatically find it on #Bioconda and #Pypi.
If you want to discuss the release, you will find the maintainer here on Mastodon!
@johanneskoester
If you discover any issues, please report them on https://github.com/snakemake/snakemake/issues.
See https://github.com/snakemake/snakemake/releases/tag/v9.13.5 for details. Here is the header of the changelog:
饾憛饾憭饾憴饾憭饾憥饾憼饾憭 饾憗饾憸饾憽饾憭饾憼 (饾憹饾憸饾憼饾憼饾憱饾憦饾憴饾懄 饾憥饾憦饾憦饾憻饾憱饾憯饾憭饾憫):
饾悂饾惍饾悹 饾悈饾悽饾惐饾悶饾惉
* cache wrapper files and wait for them in case of shared filesystem for sources: https://github.com/snakemake/snakemake/issues/3809
* correctly handle meta-wrapper tag replacement depending on the used snakemake-wrapper release: https://github.com/snakemake/snakemake/issues/3826
* ensure that flags are properly considered for input files before applying path modifiers: https://github.com/snakemake/snakemake/issues/3813
* ensure that tokens are not leaked when paths or uris of source files are logged: https://github.com/snakemake/snakemake/issues/3821
* print secs as numeric in jsonl benchmark format: https://github.com/snakemake/snakemake/issues/3814
* revert breaking change in 9.11.9 disallowing empty input files even when unused: https://github.com/snakemake/snakemake/issues/3810
* shorten report ids: https://github.com/snakemake/snakemake/issues/3822
