@eloquence

I made once this #wikidata #sparql query for all candidates for the Dutch parliament that have a #Mastodon handle:

https://w.wiki/HYoa

Maybe I will see how to change the query so that it will list only the current Dutch #MP's that have a Mastodon account.

Similar things could be done for Twitter accounts. I've no idea how current the Twitter-handle info in wikidata is. I sometimes update Mastodon handles for Dutch politicians in wikidata.

@leavex @everton137

yesterday evening work with @EvoMRI on the @wdscholia instance on Toolforge. We noted that our main instance only shows half of the results, only @wikidata 'main' part. The 'scholarly' articles part are no longer there. That day has been pending.

We seem very close. I wrote up a status 3 weeks ago: https://chem-bla-ics.linkedchemistry.info/2025/12/31/rescuing-scholia-2-getting-close.html

For this week, plz use https://qlever.scholia.wiki/

We put a banner on the #toolforge instance

#openscience #wikidata #sparql #scholia

yesterday evening work with @EvoMRI on the @wdscholia instance on Toolforge. We noted that our main instance only shows half of the results, only @wikidata 'main' part. The 'scholarly' articles part are no longer there. That day has been pending.

We seem very close. I wrote up a status 3 weeks ago: https://chem-bla-ics.linkedchemistry.info/2025/12/31/rescuing-scholia-2-getting-close.html

For this week, plz use https://qlever.scholia.wiki/

We put a banner on the #toolforge instance

#openscience #wikidata #sparql #scholia

@jerven okay, rough estimate of the number of owl:sameAs links now in the @wikipathways RDF (part of the release on the 10th):

- 1250+ owl:sameAs to SwissLipids
- 5000+ owl:sameAs to @lipidmaps.bsky.social
- 1600+ owl:sameAs to @rhea-db.bsky.social
- 77k+ owl:sameAs to UniProtKB

(powered by @wikidata via their SPARQL)

#bioinformatics #sparql #cheminformatics

@jerven I had not answered your question yet, and no patch needed, but just to answer it:

1. the original (theseus) code is here: https://github.com/wikipathways/GPML2RDF/tree/main which is used for https://sparql.wikipathways.org/

2. the new libGPML-based code is here: https://github.com/egonw/org.pathvisio.io.rdf which is used for https://plantmetwiki.bioinformatics.nl/

#plants #sparql #wikipathways

@jerven okay, rough estimate of the number of owl:sameAs links now in the @wikipathways RDF (part of the release on the 10th):

- 1250+ owl:sameAs to SwissLipids
- 5000+ owl:sameAs to @lipidmaps.bsky.social
- 1600+ owl:sameAs to @rhea-db.bsky.social
- 77k+ owl:sameAs to UniProtKB

(powered by @wikidata via their SPARQL)

#bioinformatics #sparql #cheminformatics

@jerven I had not answered your question yet, and no patch needed, but just to answer it:

1. the original (theseus) code is here: https://github.com/wikipathways/GPML2RDF/tree/main which is used for https://sparql.wikipathways.org/

2. the new libGPML-based code is here: https://github.com/egonw/org.pathvisio.io.rdf which is used for https://plantmetwiki.bioinformatics.nl/

#plants #sparql #wikipathways

new blog post: "Rescuing @wdscholia #2: getting closer" https://chem-bla-ics.linkedchemistry.info/2025/12/31/rescuing-scholia-2-getting-close.html https://doi.org/10.59350/6t2qh-2f839

"But we are getting close. So, please give qlever.scholia.wiki a go, and let us know your observations. As Linus’s law writes: Given enough eyeballs, all bugs are shallow."

Replying to this post makes it show up in my blog.

#wikidata #sparql #qlever

new blog post: "Rescuing @wdscholia #2: getting closer" https://chem-bla-ics.linkedchemistry.info/2025/12/31/rescuing-scholia-2-getting-close.html https://doi.org/10.59350/6t2qh-2f839

"But we are getting close. So, please give qlever.scholia.wiki a go, and let us know your observations. As Linus’s law writes: Given enough eyeballs, all bugs are shallow."

Replying to this post makes it show up in my blog.

#wikidata #sparql #qlever

we have moved closer to having the option to switch to a #QLever backend. Beta testers can assist by exploring the interim QLever-backed Scholia instance: https://qlever.scholia.wiki/

Any issues can reported here (we appreciate it!): https://github.com/ad-freiburg/scholia/issues

#wikidata #sparql

we have moved closer to having the option to switch to a #QLever backend. Beta testers can assist by exploring the interim QLever-backed Scholia instance: https://qlever.scholia.wiki/

Any issues can reported here (we appreciate it!): https://github.com/ad-freiburg/scholia/issues

#wikidata #sparql

heute Abend (20:00–21:00) im Free Knowledge Habitat: Wikidata Live Querying! wir denken uns gemeinsam interessante SPARQL-Anfragen für Wikidata aus 😊 (kommt zahlreich weil alleine werd ich nicht so viele Ideen haben ) https://pretalx.wikimedia.de/39c3-2025/talk/VTELBK/

#39c3 #Wikimedia #Wikidata #WDQS #SPARQL

After a year since last time, I got back to playing with our digital-collections RDF exports and writing about it -- this time, aggregating some descriptions from id.loc and Wikidata. It was fun.
https://blogs.uoregon.edu/digitallibraryservices/2025/12/22/od2-rdf-02/
I believe we still have a fair bit of work and cleanup before we'd expose the data publicly. Maybe that's what I'll write about next year...
#rdf #sparql #python #lod

"MCP server tools with RDF shapes" https://doi.org/10.37044/osf.io/8qeh5_v1

"In this paper, we present the work we have done during the Japan Biohackathon 2025 about implementing MCP servers supported by RDF data shapes to improve natural language interactions with large RDF datasets using SPARQL." https://index.biohackrxiv.org/2025/12/16/8qeh5.html

#BH25JP #MCP #SPARQL

"MCP server tools with RDF shapes" https://doi.org/10.37044/osf.io/8qeh5_v1

"In this paper, we present the work we have done during the Japan Biohackathon 2025 about implementing MCP servers supported by RDF data shapes to improve natural language interactions with large RDF datasets using SPARQL." https://index.biohackrxiv.org/2025/12/16/8qeh5.html

#BH25JP #MCP #SPARQL

RE: https://social.edu.nl/@tgx_um/115645028833529913

on Monday we have a go/no-go and we really want to go

So, are you considering sign up before Sunday evening!

#ontologies #linkeddata #sparql