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Moritz Negwer
Moritz Negwer
@moritz_negwer@mstdn.science  ·  activity timestamp 2 years ago

Very excited that our whole-mouse-brain analysis pipeline - DELiVR - is published now at Nature Methods. With DELiVR, we built an open-source, easy-to-use pipeline for analyzing image stacks from cleared mouse brains.

Paper: https://www.nature.com/articles/s41592-024-02245-2
Code: https://github.com/erturklab/delivr_cfos
Docker containers, test dataset, handbook: https://www.discotechnologies.org/DELiVR/

#neuroscience #tissueclearing #lightsheet #imageanalysis

Fig. 1 about DELiVR: 
Step 1: Tissue clearing, light-sheet microscopy
Step 2: Generate custom training data in VR 
Step 3: run the analysis pipeline with the custom-trained deep-learning model inside the dockerized DELiVR pipeline
Fig. 1 about DELiVR: Step 1: Tissue clearing, light-sheet microscopy Step 2: Generate custom training data in VR Step 3: run the analysis pipeline with the custom-trained deep-learning model inside the dockerized DELiVR pipeline
Fig. 1 about DELiVR: Step 1: Tissue clearing, light-sheet microscopy Step 2: Generate custom training data in VR Step 3: run the analysis pipeline with the custom-trained deep-learning model inside the dockerized DELiVR pipeline

DELiVR

GitHub

GitHub - erturklab/delivr_cfos: End-to-end light-sheet image analysis for mouse brains, with DL training data generated in VR

End-to-end light-sheet image analysis for mouse brains, with DL training data generated in VR - GitHub - erturklab/delivr_cfos: End-to-end light-sheet image analysis for mouse brains, with DL trai...
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