David Condon just released a #NextFlow/ #snakemame pipeline/logger alternative in #Perl:
https://metacpan.org/pod/SimpleFlow
which should make debugging and running very complex #pipelines much easier.
Egon Willigh☮gen 🟥
boosted
new to me: "Data Lineage" in #nextflow
https://nextflow.io/docs/latest/tutorials/data-lineage.html
"Data lineage in Nextflow provides comprehensive tracking of workflow runs, task executions, and output files. This feature helps you verify the integrity and reproducibility of your pipeline results by maintaining a complete history of computations and intermediate data."
new to me: "Data Lineage" in #nextflow
https://nextflow.io/docs/latest/tutorials/data-lineage.html
"Data lineage in Nextflow provides comprehensive tracking of workflow runs, task executions, and output files. This feature helps you verify the integrity and reproducibility of your pipeline results by maintaining a complete history of computations and intermediate data."
Konrad Förstner 💻🧬🦠
boosted
🧬 Weekly #Nextflow & #nfcore Drop-in Session!
Got questions about your workflows? Need help building or running pipelines?
💬 Join our open session this Friday 10–11 CET with Daniel Straub (Uni Tübingen) — no registration needed!
📍 Zoom:https://tinyurl.com/mwz84xvb
#Bioinformatics #FAIRdata #OpenScience #NFDI4Microbiota
🧬 Weekly #Nextflow & #nfcore Drop-in Session!
Got questions about your workflows? Need help building or running pipelines?
💬 Join our open session this Friday 10–11 CET with Daniel Straub (Uni Tübingen) — no registration needed!
📍 Zoom:https://tinyurl.com/mwz84xvb
#Bioinformatics #FAIRdata #OpenScience #NFDI4Microbiota
@mario_angst_sci honestly, it depends on what you mean by "data science":
- these days there are people who spell "data science" and mean #AI 🙄
- on a more serious note, there is the different library ecosystem of R and Python. This is mostly domain-specific. Both, as you know, are pretty generic, until you meet a certain domain (e.g. imputation methods or biological analysis), where one or the other excels.
- Speaking about EXCEL, you might want to drop in https://datavzrd.github.io/ - a viable alternative.
- If you really want to go nuclear, teach workflow management systems ( #Snakemake, #Nextflow). 😉
Are you part of an open source project with a community of users, contributors, and/or third party developers?
I want to interview people about their projects with particular attention to how codebases, documentation, project management tooling, and community spaces are constructed.
On these "project tours" we'll go through your project together, on video call, and talk about how the structure of the project influences, and is influenced by, your goals, culture, logistical constraints, etc.
Hi @shauna I'm part of such a community at @nf-core@mstdn.science
We build and collect analysis pipeline made with #Nextflow , we have existed since 2018 and have such a community of contributors spread all over the world: https://nf-co.re/contributors
I'd be happy to represent our community 🚀